• DocumentCode
    582896
  • Title

    Understanding the lethality of low degree essential proteins

  • Author

    Dong, Yunyuan ; Yang, Jun ; Liu, Qijun ; Wang, Zhenghua

  • Author_Institution
    Coll. of Comput., Nat. Univ. of Defense Technol., Changsha, China
  • fYear
    2012
  • fDate
    15-17 July 2012
  • Firstpage
    682
  • Lastpage
    685
  • Abstract
    Centrality-lethality rule demonstrates proteins with high degree in the protein-protein interaction (PPI) networks are more likely to be essential than those selected randomly. But why proteins with low degree also have lethality? The differences between low and high degree essential proteins were compared in six centrality measures, the relationship with protein complexes, clustering coefficient, and functional modularity. The results show that there are several properties, such as higher eigenvector centrality, more likely appear in protein complexes, higher clustering coefficient, and more neighbors with the same function, are distinguishable significant between the low and high degree essential proteins.
  • Keywords
    cellular biophysics; complex networks; molecular biophysics; proteins; PPI networks; centrality measures; centrality-lethality rule; clustering coefficient; eigenvector centrality; functional modularity; low degree essential protein lethality; protein complexes; protein-protein interaction networks; Bioinformatics; Databases; Educational institutions; Genomics; Ontologies; Proteins;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Intelligent Control and Information Processing (ICICIP), 2012 Third International Conference on
  • Conference_Location
    Dalian
  • Print_ISBN
    978-1-4577-2144-1
  • Type

    conf

  • DOI
    10.1109/ICICIP.2012.6391440
  • Filename
    6391440