DocumentCode
653939
Title
Bic-NSCSA: A hybrid artificial immune system model for DNA microarray bi-clustering
Author
Abtahi, Taraneh ; Akbarzadeh-T, Mohammad Reza
Author_Institution
Center of Excellence on Soft Comput., Ferdowsi Univ. of Mashhad, Mashhad, Iran
fYear
2013
fDate
Oct. 31 2013-Nov. 1 2013
Firstpage
295
Lastpage
299
Abstract
Bi-clustering of microarrays gene expression data is one of the almost young methods which make it possible to cluster genes and samples in microarray datasets simultaneously, and thus their results are more useful. In this paper we propose a hybrid model of clonal and negative selection algorithms to find more accurate bi-clusters in microarrays data. One of the AIS models´ shortcomings is slow convergence to global optimum. In proposed method, we use negative selection algorithm as a cooperative method behind of the clonal selection algorithm to overcome the local optimum deficiency and also, add noise-robustness to the proposed model. The algorithm is applied to yeast dataset which is one of the standard typical microarray datasets and compared with several bi-clustering algorithms. The results show significant improvement comparing with the other competing algorithms.
Keywords
DNA; artificial immune systems; biology computing; pattern clustering; AIS model; Bic-NSCSA; DNA microarray bi-clustering algorithm; clonal selection algorithms; cooperative method; hybrid artificial immune system model; hybrid model; local optimum deficiency; microarray datasets; microarray gene expression data; negative selection algorithms; noise-robustness; yeast dataset; Bioinformatics; Cloning; Genomics; Immune system; Sociology; Statistics; bi-clustering; clonal selection; microarrays data; negative selection;
fLanguage
English
Publisher
ieee
Conference_Titel
Computer and Knowledge Engineering (ICCKE), 2013 3th International eConference on
Conference_Location
Mashhad
Print_ISBN
978-1-4799-2092-1
Type
conf
DOI
10.1109/ICCKE.2013.6682876
Filename
6682876
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