• DocumentCode
    653939
  • Title

    Bic-NSCSA: A hybrid artificial immune system model for DNA microarray bi-clustering

  • Author

    Abtahi, Taraneh ; Akbarzadeh-T, Mohammad Reza

  • Author_Institution
    Center of Excellence on Soft Comput., Ferdowsi Univ. of Mashhad, Mashhad, Iran
  • fYear
    2013
  • fDate
    Oct. 31 2013-Nov. 1 2013
  • Firstpage
    295
  • Lastpage
    299
  • Abstract
    Bi-clustering of microarrays gene expression data is one of the almost young methods which make it possible to cluster genes and samples in microarray datasets simultaneously, and thus their results are more useful. In this paper we propose a hybrid model of clonal and negative selection algorithms to find more accurate bi-clusters in microarrays data. One of the AIS models´ shortcomings is slow convergence to global optimum. In proposed method, we use negative selection algorithm as a cooperative method behind of the clonal selection algorithm to overcome the local optimum deficiency and also, add noise-robustness to the proposed model. The algorithm is applied to yeast dataset which is one of the standard typical microarray datasets and compared with several bi-clustering algorithms. The results show significant improvement comparing with the other competing algorithms.
  • Keywords
    DNA; artificial immune systems; biology computing; pattern clustering; AIS model; Bic-NSCSA; DNA microarray bi-clustering algorithm; clonal selection algorithms; cooperative method; hybrid artificial immune system model; hybrid model; local optimum deficiency; microarray datasets; microarray gene expression data; negative selection algorithms; noise-robustness; yeast dataset; Bioinformatics; Cloning; Genomics; Immune system; Sociology; Statistics; bi-clustering; clonal selection; microarrays data; negative selection;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Computer and Knowledge Engineering (ICCKE), 2013 3th International eConference on
  • Conference_Location
    Mashhad
  • Print_ISBN
    978-1-4799-2092-1
  • Type

    conf

  • DOI
    10.1109/ICCKE.2013.6682876
  • Filename
    6682876