Title :
Towards generalized nuclear segmentation in histological images
Author :
Vahadane, Abhishek ; Sethi, Ankit
Author_Institution :
Dept. of Electron. & Electr. Eng., Indian Inst. of Technol., Guwahati, Guwahati, India
Abstract :
Computer aided diagnosis in cancer pathology (computational pathology) using histological images of biopsies is an emerging field. Segmentation of cell nuclei can be an important step in such image processing pipelines. Although seeded watershed segmentation is a simple and computationally efficient segmentation technique, it is prone to errors like over-segmentation when applied to histological images. We report specific enhancements to this technique to improve segmentation of cell nuclei in histological images. Foreground seeds were generated by fast radial symmetry transform (FRST). Otsu thresholding was used on enhanced image to estimate tentative foreground map. Background markers were computed from the tentative foreground map. False detections in the segmented output were removed by logical AND with the tentative foreground map. Using these enhancements nuclear segmentation was significantly improved on histological images (H&E stained breast and intestinal tissue images, Feulgen stained images of prostate tissues).
Keywords :
biological tissues; cancer; cellular biophysics; image enhancement; image segmentation; medical image processing; patient diagnosis; transforms; FRST; Feulgen stained images; H&E stained breast; Otsu thresholding; background markers; biopsy; cancer pathology; cell nuclei segmentation; computational pathology; computer aided diagnosis; false detections; fast radial symmetry transform; foreground seeds; histological images; image enhancement; image processing pipelines; intestinal tissue images; logical AND; nuclear segmentation; over-segmentation; prostate tissues; seeded watershed segmentation; segmentation technique; segmented output; tentative foreground map; Biomedical imaging; Cancer; Image segmentation; Microscopy; Shape; Smoothing methods; Transforms; histological images; seeded watershed segmentation; segmentation of cell nuclei;
Conference_Titel :
Bioinformatics and Bioengineering (BIBE), 2013 IEEE 13th International Conference on
Conference_Location :
Chania
DOI :
10.1109/BIBE.2013.6701556