• DocumentCode
    667312
  • Title

    Some results on topological colored motifs in metabolic networks

  • Author

    Araujo, Ernesto ; Stefanes, Marco A.

  • Author_Institution
    Fac. de Comput., Univ. Fed. de Mato Grosso do Sul, Dourados, Brazil
  • fYear
    2013
  • fDate
    10-13 Nov. 2013
  • Firstpage
    1
  • Lastpage
    5
  • Abstract
    In this work, we address the topological colored motif search problem in metabolic networks. This problem is a concern in biology, which seeks to describe the functions and the evolution of metabolism. Recently, several variations of this problem have been studied. Here, we present some hardness results for finding motifs. Furthermore, we describe the first polynomial algorithm for the case in which the motif is a colorful tree. We also detail a data structure that allows finding all of these types of motifs in a metabolic network.
  • Keywords
    data structures; evolution (biological); graph colouring; hardness; molecular biophysics; molecular configurations; polynomials; trees (mathematics); colorful tree; data structure; hardness; metabolic networks; metabolism evolution; polynomial algorithm; topological colored motifs; Biochemistry; Color; Data structures; Image color analysis; Polynomials; Search problems;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Bioinformatics and Bioengineering (BIBE), 2013 IEEE 13th International Conference on
  • Conference_Location
    Chania
  • Type

    conf

  • DOI
    10.1109/BIBE.2013.6701650
  • Filename
    6701650