Title :
Optimization Strategies for MPI-Interoperable Active Messages
Author :
Xin Zhao ; Balaji, Pavan ; Gropp, William ; Thakur, Rahul
Author_Institution :
Univ. of Illinois at Urbana-Champaign, Urbana, IL, USA
Abstract :
Data-intensive applications, such as those in bioinformatics and social network analysis, differ from traditional scientific applications in that they often involve data-driven and irregular computation/communication patterns, making them ill-suited for traditional data movement approaches. Active Messages (AM) is an alternative programming model that allows dynamically moving computation closer to data, rather than moving the data to the local process. In our previous work, we proposed an MPI-interoperable AM framework that allows existing MPI applications to incrementally take advantage of AM capabilities. While that work presented a baseline implementation of how AMs semantically interact with the rest of the MPI infrastructure, it had several performance shortcomings. In this paper, we analyze these performance shortcomings and propose three optimization strategies: one implicitly derived by the MPI implementation and two explicitly hinted to by the application user. In addition to the detailed description of these optimization strategies, the paper presents a thorough performance evaluation on a 4096-core cluster that demonstrates considerable performance advantages from these strategies.
Keywords :
message passing; open systems; optimisation; 4096-core cluster; AM; MPI-interoperable active messages; bioinformatics; data movement approaches; data-intensive applications; irregular computation-communication patterns; optimization strategies; scientific applications; social network analysis; Bioinformatics; Layout; Optimization; Pipelines; Runtime; Semantics; Synchronization; Active messages; Data-intensive applications; MPI; Multicore; RMA;
Conference_Titel :
Dependable, Autonomic and Secure Computing (DASC), 2013 IEEE 11th International Conference on
Conference_Location :
Chengdu
Print_ISBN :
978-1-4799-3380-8
DOI :
10.1109/DASC.2013.116