Title :
Infering an ontology of single cell motions from high-throughput microscopy data
Author :
Sebag, Alice Schoenauer ; Plancade, Sandra ; Raulet-Tomkiewicz, Celine ; Barouki, Robert ; Vert, Jean-Philippe ; Walter, Thomas
Author_Institution :
CBIO-Centre for Comput. Biol., PSL-Res. Univ., France
Abstract :
Cellular motility is a fundamental biological process. Progress in the fields of gene silencing and high-throughput (HT) microscopy provide us with the tools to study its molecular basis and potential perturbators. The primary contribution of this paper is to present MotIW, a generic workflow for single cell motility study in HT time-lapse screening data. We successfully apply it to a simulated screen, as well as a genome-wide screen. Furthermore, MotIW enables the identification of eigth motility patterns into which all trajectories from this dataset divide up into, without any prior model of cell motion.
Keywords :
biological techniques; biology computing; cell motility; cellular biophysics; data mining; genomics; microscopy; HT time-lapse screening data; MotIW; biological process; cell motility pattern identification; cell motion model; gene silencing; generic workflow; genome-wide screen; high-throughput microscopy data; molecular basis; potential perturbator; single cell motility study; single cell motion ontology; Bioinformatics; Feature extraction; Genomics; Motion pictures; Tracking; Trajectory; Videos; High-content (high-throughput) screening; data mining; pattern recognition and classification;
Conference_Titel :
Biomedical Imaging (ISBI), 2015 IEEE 12th International Symposium on
Conference_Location :
New York, NY
DOI :
10.1109/ISBI.2015.7163840