• DocumentCode
    884327
  • Title

    Improving the Fitness of High-Dimensional Biomechanical Models via Data-Driven Stochastic Exploration

  • Author

    Santos, Veronica J. ; Bustamante, Carlos D. ; Valero-Cuevas, Francisco J.

  • Author_Institution
    Sibley Sch. of Mech. & Aerosp. Eng., Cornell Univ., Ithaca, NY
  • Volume
    56
  • Issue
    3
  • fYear
    2009
  • fDate
    3/1/2009 12:00:00 AM
  • Firstpage
    552
  • Lastpage
    564
  • Abstract
    The field of complex biomechanical modeling has begun to rely on Monte Carlo techniques to investigate the effects of parameter variability and measurement uncertainty on model outputs, search for optimal parameter combinations, and define model limitations. However, advanced stochastic methods to perform data-driven explorations, such as Markov chain Monte Carlo (MCMC), become necessary as the number of model parameters increases. Here, we demonstrate the feasibility and, what to our knowledge is, the first use of an MCMC approach to improve the fitness of realistically large biomechanical models. We used a Metropolis-Hastings algorithm to search increasingly complex parameter landscapes (3, 8, 24, and 36 dimensions) to uncover underlying distributions of anatomical parameters of a ldquotruth modelrdquo of the human thumb on the basis of simulated kinematic data (thumbnail location, orientation, and linear and angular velocities) polluted by zero-mean, uncorrelated multivariate Gaussian ldquomeasurement noise.rdquo Driven by these data, ten Markov chains searched each model parameter space for the subspace that best fit the data (posterior distribution). As expected, the convergence time increased, more local minima were found, and marginal distributions broadened as the parameter space complexity increased. In the 36-D scenario, some chains found local minima but the majority of chains converged to the true posterior distribution (confirmed using a cross-validation dataset), thus demonstrating the feasibility and utility of these methods for realistically large biomechanical problems.
  • Keywords
    Markov processes; Monte Carlo methods; angular velocity; biomechanics; kinematics; measurement uncertainty; 36-D scenario; Markov chain Monte Carlo model; Metropolis-Hastings algorithm; Monte Carlo technique; cross-validation dataset; data-driven stochastic exploration; high-dimensional biomechanical model; simulated kinematic data; stochastic method; truth model; uncertainty measurement; uncorrelated multivariate Gaussian noise; Angular velocity; Gaussian noise; Humans; Kinematics; Land pollution; Marine pollution; Measurement uncertainty; Monte Carlo methods; Stochastic processes; Thumb; Bayesian statistics; Markov chain Monte Carlo (MCMC); Metropolis–Hastings algorithm; biomechanical model; parameter estimation; thumb; Algorithms; Bayes Theorem; Biomechanics; Computer Simulation; Humans; Markov Chains; Models, Biological; Monte Carlo Method; Normal Distribution; Reproducibility of Results; Thumb;
  • fLanguage
    English
  • Journal_Title
    Biomedical Engineering, IEEE Transactions on
  • Publisher
    ieee
  • ISSN
    0018-9294
  • Type

    jour

  • DOI
    10.1109/TBME.2008.2006033
  • Filename
    4639507