GGM: Efficient Navigation and Mining in Distributed Genomedical Data

Author

Pierson, Jean-Marc ; Gossa, Julien ; Wehrle, Pascal ; Cardenas, Yonny ; Cahon, Sébastien ; El Samad, Mahmoud ; Brunie, Lionel ; Dhaenens, Clarisse ; Hameurlain, Abdelkader ; Melab, Nouredine ; Miquel, Maryvonne ; Morvan, Franck ; Talbi, El-Ghazali ; Tchou

Author_Institution

Inst. of Res. in Comput. Sci., Univ. Paul Sabatier, Toulouse

Volume

6

Issue

2

fYear

2007

fDate

6/1/2007 12:00:00 AM

Firstpage

110

Lastpage

116

Abstract

The integration of genomics and patient related data is considered as one of the most promising investigation topic in health care research. Started in 2004, the Grid for Geno Medicine (GGM) project aims at providing a comprehensive grid software infrastructure designed to allow biologists to mine and analyze relationships between medical, genetic, and genomic data stored in distributed datawarehouses. The proposed layered service oriented architecture offers a number of independent but compliant services that can be deployed in a grid environment. This paper presents these services insisting on their integration into a common software platform, the use case that is carried out. It also presents the current state of the developments and of the performance evaluations.

Keywords

data mining; data warehouses; genetics; grid computing; health care; medical computing; GGM; comprehensive grid software infrastructure; data mining; distributed datawarehouses; distributed genomedical data; genetic data; geno medicine; genomics; health care; layered service oriented architecture; medical data; Bioinformatics; Biomedical imaging; Computer science; Data mining; Genetics; Genomics; Grid computing; Medical diagnostic imaging; Navigation; Service oriented architecture; Data mining; Grid computing; data warehousing; distributed systems; genomedical data management; Database Management Systems; Databases, Genetic; Genomics; Information Storage and Retrieval; Internet; Medical Records Systems, Computerized; User-Computer Interface;

fLanguage

English

Journal_Title

NanoBioscience, IEEE Transactions on

Publisher

ieee

ISSN

1536-1241

Type

jour

DOI

10.1109/TNB.2007.897477

Filename

4220638