• DocumentCode
    917750
  • Title

    Control approaches for probabilistic gene regulatory networks - What approaches have been developed for addreassinig the issue of intervention?

  • Author

    Datta, Aniruddha ; Pal, Ranadip ; Choudhary, Ashish ; Dougherty, Edward R.

  • Author_Institution
    Dept. of Electr. & Comput. Eng., Texas A&M Univ., College Station, TX
  • Volume
    24
  • Issue
    1
  • fYear
    2007
  • Firstpage
    54
  • Lastpage
    63
  • Abstract
    This article presents a tutorial survey of some of the recent results on intervention in the context of probabilistic gene regulatory networks, which, owing to their original binary formulation and their usual application using binary and ternary gene-expression quantization, are generically called probabilistic Boolean networks (PBNs). These are essentially probabilistic generalizations of the standard Boolean networks introduced by Kauffman that allow the incorporation of uncertainty into the intergene relationships. Given a PBN, the transition from one state to the next takes place in accordance with certain transition probabilities and their dynamics, and hence intervention can be studied in the context of homogeneous Markov chains with finite state spaces
  • Keywords
    Markov processes; biocontrol; biological techniques; genetic engineering; binary formulation; control approaches; finite state spaces; homogeneous Markov chains; intergene relationships; probabilistic Boolean networks; probabilistic gene regulatory networks; ternary gene-expression quantization; transition probabilities; Bioinformatics; Cancer; Decision making; Diseases; Genetics; Genomics; Predictive models; Signal processing; Steady-state; Uncertainty;
  • fLanguage
    English
  • Journal_Title
    Signal Processing Magazine, IEEE
  • Publisher
    ieee
  • ISSN
    1053-5888
  • Type

    jour

  • DOI
    10.1109/MSP.2007.273057
  • Filename
    4049913