DocumentCode
917750
Title
Control approaches for probabilistic gene regulatory networks - What approaches have been developed for addreassinig the issue of intervention?
Author
Datta, Aniruddha ; Pal, Ranadip ; Choudhary, Ashish ; Dougherty, Edward R.
Author_Institution
Dept. of Electr. & Comput. Eng., Texas A&M Univ., College Station, TX
Volume
24
Issue
1
fYear
2007
Firstpage
54
Lastpage
63
Abstract
This article presents a tutorial survey of some of the recent results on intervention in the context of probabilistic gene regulatory networks, which, owing to their original binary formulation and their usual application using binary and ternary gene-expression quantization, are generically called probabilistic Boolean networks (PBNs). These are essentially probabilistic generalizations of the standard Boolean networks introduced by Kauffman that allow the incorporation of uncertainty into the intergene relationships. Given a PBN, the transition from one state to the next takes place in accordance with certain transition probabilities and their dynamics, and hence intervention can be studied in the context of homogeneous Markov chains with finite state spaces
Keywords
Markov processes; biocontrol; biological techniques; genetic engineering; binary formulation; control approaches; finite state spaces; homogeneous Markov chains; intergene relationships; probabilistic Boolean networks; probabilistic gene regulatory networks; ternary gene-expression quantization; transition probabilities; Bioinformatics; Cancer; Decision making; Diseases; Genetics; Genomics; Predictive models; Signal processing; Steady-state; Uncertainty;
fLanguage
English
Journal_Title
Signal Processing Magazine, IEEE
Publisher
ieee
ISSN
1053-5888
Type
jour
DOI
10.1109/MSP.2007.273057
Filename
4049913
Link To Document