• DocumentCode
    951309
  • Title

    Serially regulated biological networks fully realise a constrained set of functions

  • Author

    Mugler, A. ; Ziv, E. ; Nemenman, I. ; Wiggins, C.H.

  • Author_Institution
    Dept. of Phys., Columbia Univ., New York, NY
  • Volume
    2
  • Issue
    5
  • fYear
    2008
  • fDate
    9/1/2008 12:00:00 AM
  • Firstpage
    313
  • Lastpage
    322
  • Abstract
    It is shown that biological networks with serial regulation (each node regulated by at most one other node) are constrained to direct functionality, in which the sign of the effect of an environmental input on a target species depends only on the direct path from the input to the target, even when there is a feedback loop allowing for multiple interaction pathways. Using a stochastic model for a set of small transcriptional regulatory networks that have been studied experimentally, it is further found that all networks can achieve all functions permitted by this constraint under reasonable settings of biochemical parameters. This underscores the functional versatility of the networks.
  • Keywords
    biochemistry; feedback; genetics; molecular biophysics; stochastic processes; biochemical parameters; biological networks; feedback loop; multiple interaction pathways; serial regulation; stochastic model; target species; transcriptional regulatory networks;
  • fLanguage
    English
  • Journal_Title
    Systems Biology, IET
  • Publisher
    iet
  • ISSN
    1751-8849
  • Type

    jour

  • DOI
    10.1049/iet-syb:20080097
  • Filename
    4648912