• DocumentCode
    9980
  • Title

    Multi-scale approach for simulating time-delay biochemical reaction systems

  • Author

    Yuanling Niu ; Burrage, Kevin ; Chengjian Zhang

  • Author_Institution
    Sch. of Math. & Stat., Central South Univ., Changsha, China
  • Volume
    9
  • Issue
    1
  • fYear
    2015
  • fDate
    2 2015
  • Firstpage
    31
  • Lastpage
    38
  • Abstract
    This study presents a multi-scale approach for simulating time-delay biochemical reaction systems when there are wide ranges of molecular numbers. The authors construct a new efficient approach based on partitioning into slow and fast subsets in conjunction with predictor-corrector methods. This multi-scale approach is shown to be much more efficient than existing methods such as the delay stochastic simulation algorithm and the modified next reaction method. Numerical testing on several important problems in systems biology confirms the accuracy and computational efficiency of this approach.
  • Keywords
    biochemistry; biological techniques; delays; predictor-corrector methods; computational efficiency; delay stochastic simulation algorithm; method accuracy; modified next reaction method; multiscale approach; numerical testing; predictor-corrector methods; systems biology; time-delay biochemical reaction systems;
  • fLanguage
    English
  • Journal_Title
    Systems Biology, IET
  • Publisher
    iet
  • ISSN
    1751-8849
  • Type

    jour

  • DOI
    10.1049/iet-syb.2013.0023
  • Filename
    7005037